2019-01-04 08:55:22 -05:00
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//Profile config names for nf-core/configs
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params {
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2019-01-07 08:25:06 -05:00
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config_profile_description = 'QBiC Core Facility cluster profile provided by nf-core/configs.'
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2020-03-23 12:16:34 -04:00
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config_profile_contact = 'Gisela Gabernet (@ggabernet)'
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2019-01-04 08:55:22 -05:00
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config_profile_url = 'http://qbic.uni-tuebingen.de/'
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}
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2018-11-23 10:56:34 -05:00
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singularity {
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2018-11-26 11:32:06 -05:00
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enabled = true
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2019-10-08 07:20:58 -04:00
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cacheDir = '/nfsmounts/container'
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2018-11-23 10:56:34 -05:00
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}
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process {
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2019-11-08 04:06:23 -05:00
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beforeScript = 'module load devel/singularity/3.4.2'
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2018-11-26 11:32:06 -05:00
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executor = 'slurm'
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2020-03-06 04:46:37 -05:00
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queue = { task.memory > 60.GB || task.cpus > 20 ? 'qbic' : 'compute' }
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2020-05-04 11:09:43 -04:00
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scratch = 'true'
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2018-11-23 10:56:34 -05:00
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}
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2019-07-03 03:21:16 -04:00
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weblog{
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enabled = true
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2019-10-10 06:56:39 -04:00
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url = 'https://services.qbic.uni-tuebingen.de/flowstore/workflows'
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2019-07-03 03:21:16 -04:00
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}
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2018-11-23 10:56:34 -05:00
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params {
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2019-03-12 09:58:41 -04:00
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igenomes_base = '/nfsmounts/igenomes'
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2020-03-06 04:25:08 -05:00
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max_memory = 1999.GB
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max_cpus = 128
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2018-11-23 10:56:34 -05:00
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max_time = 140.h
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}
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