nf-configs/conf/pipeline/sarek/munin.config

// Profile config names for nf-core/configs

params {
  // Specific nf-core/configs params
  config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
  config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs'

  // Specific nf-core/sarek configs params
  max_memory = 752.GB
  max_cpus = 46
  max_time = 72.h

  // Specific nf-core/sarek params
  annotation_cache = true
  pon = '/data1/PON/vcfs/BTB.PON.vcf.gz'
  pon_index = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi'
  snpEff_cache = '/data1/cache/snpEff/'
  vep_cache = '/data1/cache/VEP/'
}

// Specific nf-core/sarek process configuration
process {
  withLabel:sentieon {
    beforeScript = {params.sentieon ? 'module load sentieon/201808.05' : ''}
    container = {params.sentieon ? '' : 'nfcore/sarek:dev'}
  }
}