mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-21 16:16:04 +00:00
Update holo_globe
This commit is contained in:
parent
bb25c77e7c
commit
0b51552e88
1 changed files with 16 additions and 14 deletions
|
@ -1,28 +1,30 @@
|
|||
//Profile config names for nf-core/configs
|
||||
params {
|
||||
config_profile_description = 'Section for Hologenomics @ Globe Institute, University of Copenhagen - seg_globe profile provided by nf-core/configs.'
|
||||
config_profile_description = 'Section for Hologenomics @ Globe Institute, University of Copenhagen - holo_globe profile provided by nf-core/configs.'
|
||||
config_profile_contact = 'Aashild Vaagene (@ashildv)'
|
||||
config_profile_url = 'https://globe.ku.dk/research/evogenomics/'
|
||||
max_memory = 250.GB
|
||||
max_cpus = 35
|
||||
max_memory = 500.GB
|
||||
max_cpus = 50
|
||||
max_time = 720.h
|
||||
}
|
||||
|
||||
conda {
|
||||
enabled=true
|
||||
cacheDir = '/maps/projects/mjolnir1/people/prj558/cache/conda'
|
||||
singularity {
|
||||
enabled = true
|
||||
autoMounts = true
|
||||
cacheDir = '/maps/projects/mjolnir1/data/cache/nf-eager/singularity'
|
||||
}
|
||||
|
||||
|
||||
//singularity {
|
||||
// enabled = true
|
||||
// autoMounts = true
|
||||
// cacheDir = '/shared/volume/hologenomics/data/cache/nf-eager/singularity'
|
||||
//}
|
||||
|
||||
env {
|
||||
NXF_SINGULARITY_TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
|
||||
SINGULARITY_TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
|
||||
NXF_OPTS='-Djava.io.tmpdir=/maps/projects/mjolnir1/people/$USER/eager_tmp/ -Xms1g -Xmx4g'
|
||||
TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
|
||||
NXF_TEMP='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
|
||||
SINGULARITY_LOCALCACHEDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
|
||||
}
|
||||
|
||||
process {
|
||||
executor = 'slurm'
|
||||
queue = { task.time < 24.h ? 'hologenomics-short' : task.time < 168.h ? 'hologenomics' : 'hologenomics-long' }
|
||||
}
|
||||
|
||||
cleanup = true
|
||||
|
|
Loading…
Reference in a new issue