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Update holo_globe
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1 changed files with 16 additions and 14 deletions
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Section for Hologenomics @ Globe Institute, University of Copenhagen - seg_globe profile provided by nf-core/configs.'
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config_profile_description = 'Section for Hologenomics @ Globe Institute, University of Copenhagen - holo_globe profile provided by nf-core/configs.'
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config_profile_contact = 'Aashild Vaagene (@ashildv)'
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config_profile_url = 'https://globe.ku.dk/research/evogenomics/'
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max_memory = 250.GB
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max_cpus = 35
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max_memory = 500.GB
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max_cpus = 50
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max_time = 720.h
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}
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conda {
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enabled=true
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cacheDir = '/maps/projects/mjolnir1/people/prj558/cache/conda'
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singularity {
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enabled = true
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autoMounts = true
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cacheDir = '/maps/projects/mjolnir1/data/cache/nf-eager/singularity'
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}
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//singularity {
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// enabled = true
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// autoMounts = true
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// cacheDir = '/shared/volume/hologenomics/data/cache/nf-eager/singularity'
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//}
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env {
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NXF_SINGULARITY_TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
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SINGULARITY_TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
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NXF_OPTS='-Djava.io.tmpdir=/maps/projects/mjolnir1/people/$USER/eager_tmp/ -Xms1g -Xmx4g'
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TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
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NXF_TEMP='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
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SINGULARITY_LOCALCACHEDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
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}
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process {
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executor = 'slurm'
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queue = { task.time < 24.h ? 'hologenomics-short' : task.time < 168.h ? 'hologenomics' : 'hologenomics-long' }
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}
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cleanup = true
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