millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Update holo_globe

Browse source
This commit is contained in:
Åshild J. Vågene 2022-05-31 15:23:43 +02:00 committed by GitHub
parent bb25c77e7c
commit 0b51552e88
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 16 additions and 14 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

26
conf/holo_globe
View file

@ -1,28 +1,30 @@
//Profile config names for nf-core/configs //Profile config names for nf-core/configs
params { params {
config_profile_description = 'Section for Hologenomics @ Globe Institute, University of Copenhagen - seg_globe profile provided by nf-core/configs.' config_profile_description = 'Section for Hologenomics @ Globe Institute, University of Copenhagen - holo_globe profile provided by nf-core/configs.'
config_profile_contact = 'Aashild Vaagene (@ashildv)' config_profile_contact = 'Aashild Vaagene (@ashildv)'
config_profile_url = 'https://globe.ku.dk/research/evogenomics/' config_profile_url = 'https://globe.ku.dk/research/evogenomics/'
max_memory = 250.GB max_memory = 500.GB
max_cpus = 35 max_cpus = 50
max_time = 720.h max_time = 720.h
} }
conda { singularity {
enabled = true enabled = true
cacheDir = '/maps/projects/mjolnir1/people/prj558/cache/conda' autoMounts = true
cacheDir = '/maps/projects/mjolnir1/data/cache/nf-eager/singularity'
} }
env {
//singularity { NXF_SINGULARITY_TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
// enabled = true SINGULARITY_TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
// autoMounts = true NXF_OPTS='-Djava.io.tmpdir=/maps/projects/mjolnir1/people/$USER/eager_tmp/ -Xms1g -Xmx4g'
// cacheDir = '/shared/volume/hologenomics/data/cache/nf-eager/singularity' TMPDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
//} NXF_TEMP='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
SINGULARITY_LOCALCACHEDIR='/maps/projects/mjolnir1/people/$USER/eager_tmp/'
}
process { process {
executor = 'slurm' executor = 'slurm'
queue = { task.time < 24.h ? 'hologenomics-short' : task.time < 168.h ? 'hologenomics' : 'hologenomics-long' }
} }
cleanup = true cleanup = true