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modify singularity settings

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This commit is contained in:
ikeller 2021-05-20 10:53:35 +02:00
parent af1e57027d
commit 0e3898eabf
1 changed files with 7 additions and 5 deletions
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12
conf/unibe_ibu.config
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@ -1,5 +1,7 @@
singularity.autoMounts = true
params { params {
config_profile_description = "University of Bern, Interfaculty Bioinformatics Unit cluster profile" config_profile_description = "University of Bern, Interfaculty Bioinformatics Unit cluster profile"
config_profile_contact = "irene.keller@dbmr.unibe.ch; info@bioinformatics.unibe.ch" config_profile_contact = "irene.keller@dbmr.unibe.ch; info@bioinformatics.unibe.ch"
config_profile_url = "https://www.bioinformatics.unibe.ch/" config_profile_url = "https://www.bioinformatics.unibe.ch/"
max_memory = 500.GB max_memory = 500.GB
@ -8,16 +10,16 @@ params {
} }
process { process {
executor = "slurm" executor = "slurm"
maxRetries = 2 maxRetries = 2
beforeScript = 'mkdir -p ./tmp/ && export TMPDIR=./tmp/' beforeScript = 'mkdir -p ./tmp/ && export TMPDIR=./tmp/'
} }
executor { executor {
queueSize = 30 queueSize = 30
} }
singularity { singularity {
enable = true docker.enabled = false
autoMounts = true singularity.enabled = true
} }