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Merge pull request #104 from jfy133/master

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Attempt to fix process specific configs with pipeline specific configs
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Alexander Peltzer 2019-12-06 17:16:37 +01:00 committed by GitHub
commit 1f7940c2ee
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2 changed files with 5 additions and 5 deletions
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5
conf/pipeline/eager/shh.config
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@ -4,13 +4,14 @@ params {
// Specific nf-core/configs params // Specific nf-core/configs params
config_profile_contact = 'James Fellows Yates (@jfy133)' config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs' config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs'
igenomes_base = "/projects1/public_data/igenomes/"
} }
// Specific nf-core/eager process configuration // Specific nf-core/eager process configuration
process { process {
withName:malt { withName:malt {
memory = { check_max( 756.GB * task.attempt, 'memory' ) } memory = { 756.GB * task.attempt ]
cpus = { check_max(64 * task.attempt, 'cpus') } cpus = { 64 * task.attempt }
time = 1440.h time = 1440.h
queue = { task.memory > 756.GB ? 'supercruncher' : 'long' } queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
} }

1
conf/shh.config
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@ -29,7 +29,6 @@ params {
igenomes_base = "/projects1/public_data/igenomes/" igenomes_base = "/projects1/public_data/igenomes/"
} }
profiles { profiles {
cdag { cdag {
config_profile_description = 'MPI-SHH CDAG profile, provided by nf-core/configs.' config_profile_description = 'MPI-SHH CDAG profile, provided by nf-core/configs.'