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Add in sample datastorage for Illumina Platinum genomes.

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Venkat Malladi 2021-11-18 15:28:34 -06:00
parent b1a9c2e4c6
commit 219244f1b4
2 changed files with 5 additions and 5 deletions
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8
conf/azurebatch.config
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@ -4,11 +4,11 @@ params {
config_profile_contact = 'Venkat Malladi (@vsmalladi)' config_profile_contact = 'Venkat Malladi (@vsmalladi)'
config_profile_url = 'https://azure.microsoft.com/services/batch/' config_profile_url = 'https://azure.microsoft.com/services/batch/'
az_location = 'westeurope' az_location = 'westus2'
batch_name = false batch_name = false
batch_key = false batch_key = false
storage_name = 'nextflow-test' storage_name = 'datasetplatinumgenomes'
storage_key = 'aepeL0FVpPKAM7i9F1F68p9n//0zi+xE1vNStbHD3sVJjqfGqtDd007UxaTUaCqaClHLWEj8JG2HV0AnTLVDaA==' sas_token = 'sv=2019-02-02&se=2050-01-01T08%3A00%3A00Z&si=prod&sr=c&sig=FFfZ0QaDcnEPQmWsshtpoYOjbzd4jtwIWeK%2Fc4i9MqM%3D'
} }
docker { docker {
@ -21,6 +21,6 @@ azure.batch.accountName = params.batch_name
azure.batch.accountKey = params.batch_key azure.batch.accountKey = params.batch_key
azure.batch.autoPoolMode = true azure.batch.autoPoolMode = true
azure.storage.accountName = params.storage_name azure.storage.accountName = params.storage_name
azure.storage.accountKey = params.storage_key azure.storage.sasToken = params.sas_token
workDir = 'az://work' workDir = 'az://work'
process.executor = 'azurebatch' process.executor = 'azurebatch'

2
docs/azurebatch.md
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@ -1,7 +1,7 @@
# nf-core/configs: azurebatch Configuration # nf-core/configs: azurebatch Configuration
To be used with the `azurebatch` profile by specifying the `-profile azurebatch` when running nf-core pipelines. To be used with the `azurebatch` profile by specifying the `-profile azurebatch` when running nf-core pipelines.
Custom queue and storage need to be supplied with `params.az_location`, `params.batch_name`, `params.batch_key`, `params.storage_name`, `params.storage_key`. Custom queue and storage need to be supplied with `params.az_location`, `params.batch_name`, `params.batch_key`, `params.storage_name`, `params.sas_token`.
## Azure Batch Setup ## Azure Batch Setup