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Merge pull request #218 from asafpr/master

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added jax singularity cache dir
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Alexander Peltzer 2021-03-24 17:39:03 +01:00 committed by GitHub
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1 changed files with 6 additions and 2 deletions
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conf/jax.config
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@ -2,6 +2,7 @@ params {
config_profile_description = 'The Jackson Laboratory Sumner HPC profile provided by nf-core/configs.' config_profile_description = 'The Jackson Laboratory Sumner HPC profile provided by nf-core/configs.'
config_profile_contact = 'Asaf Peer (@peera)' config_profile_contact = 'Asaf Peer (@peera)'
config_profile_url = 'https://jacksonlaboratory.sharepoint.com/sites/ResearchIT/SitePages/Welcome-to-Sumner.aspx' config_profile_url = 'https://jacksonlaboratory.sharepoint.com/sites/ResearchIT/SitePages/Welcome-to-Sumner.aspx'
singularity_cache_dir = '/fastscratch/singularity_cache_nfcore'
} }
executor.$slurm.queueSize = 250 executor.$slurm.queueSize = 250
@ -12,8 +13,11 @@ process {
module = "slurm" module = "slurm"
beforeScript = 'module load singularity' beforeScript = 'module load singularity'
} }
singularity.enabled = true singularity{
singularity.autoMounts = true enabled = true
autoMounts = true
cacheDir = params.singularity_cache_dir
}
params { params {
max_memory = 768.GB max_memory = 768.GB
max_cpus = 70 max_cpus = 70