millironx/nf-configs
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Update computerome.config

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Marc Trunjer Kusk Nielsen 2021-09-13 14:22:22 +02:00 committed by GitHub
parent 366f945a40
commit 275288632d
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1 changed files with 3 additions and 3 deletions
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conf/computerome.config
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@ -5,7 +5,7 @@ params {
config_profile_url = 'https://www.computerome.dk/' config_profile_url = 'https://www.computerome.dk/'
project = null project = null
schema_ignore_params = "project" schema_ignore_params = "project"
cache = { "/home/projects/$params.project/scratch" } cache_dir = { "/home/projects/$params.project/scratch" }
//Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this //Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this
max_memory = 1500.GB max_memory = 1500.GB
@ -18,11 +18,11 @@ params {
singularity { singularity {
enabled = true enabled = true
autoMounts = true autoMounts = true
cacheDir = params.cache cacheDir = params.cache_dir
} }
process { process {
beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache; export NXF_SINGULARITY_CACHEDIR=$params.cache" } beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache_dir; export NXF_SINGULARITY_CACHEDIR=$params.cache_dir" }
executor = 'pbs' executor = 'pbs'
queueSize = 2000 queueSize = 2000
clusterOptions = { "-A $params.project -W group_list=$params.project" } clusterOptions = { "-A $params.project -W group_list=$params.project" }