millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-21 16:16:04 +00:00
Code Issues Releases Packages Activity

Update computerome.config

Browse source
This commit is contained in:
Marc Trunjer Kusk Nielsen 2021-09-13 14:20:55 +02:00 committed by GitHub
parent 8ebdd43898
commit 366f945a40
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
conf/computerome.config
View file

@ -5,7 +5,7 @@ params {
config_profile_url = 'https://www.computerome.dk/'
project = null
schema_ignore_params = "project"
singularity_cache_dir = { "/home/projects/$params.project/scratch" }
cache = { "/home/projects/$params.project/scratch" }
//Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this
max_memory = 1500.GB
@ -18,11 +18,11 @@ params {
singularity {
enabled = true
autoMounts = true
cacheDir = params.singularity_cache_dir
cacheDir = params.cache
}
process {
beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=/home/projects/$params.project/scratch" }
beforeScript = { "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache; export NXF_SINGULARITY_CACHEDIR=$params.cache" }
executor = 'pbs'
queueSize = 2000
clusterOptions = { "-A $params.project -W group_list=$params.project" }