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Merge pull request #74 from maxibor/master

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Resource based queue choice for SHH config
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James A. Fellows Yates 2019-10-25 20:17:47 +02:00 committed by GitHub
commit 28cd84d44a
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1 changed files with 3 additions and 3 deletions
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conf/shh.config
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@ -14,7 +14,7 @@ singularity {
process {
executor = 'slurm'
queue = 'short'
queue = { task.memory > 756.GB ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
}
executor {
@ -22,9 +22,9 @@ executor {
}
params {
max_memory = 256.GB
max_memory = 2.TB
max_cpus = 32
max_time = 2.h
max_time = 720.h
//Illumina iGenomes reference file path
igenomes_base = "/projects1/public_data/igenomes/"
}