millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-24 17:19:54 +00:00
Code Issues Releases Packages Activity

Merge pull request #74 from maxibor/master

Browse source 
Resource based queue choice for SHH config
This commit is contained in:
James A. Fellows Yates 2019-10-25 20:17:47 +02:00 committed by GitHub
commit 28cd84d44a
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
conf/shh.config
View file

@ -14,7 +14,7 @@ singularity {
process { process {
executor = 'slurm' executor = 'slurm'
queue = 'short' queue = { task.memory > 756.GB ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' }
} }
executor { executor {
@ -22,9 +22,9 @@ executor {
} }
params { params {
max_memory = 256.GB max_memory = 2.TB
max_cpus = 32 max_cpus = 32
max_time = 2.h max_time = 720.h
//Illumina iGenomes reference file path //Illumina iGenomes reference file path
igenomes_base = "/projects1/public_data/igenomes/" igenomes_base = "/projects1/public_data/igenomes/"
} }