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Merge pull request #176 from jfy133/master
Add new group profile for eager@SHH
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commit
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2 changed files with 16 additions and 0 deletions
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@ -65,6 +65,18 @@ process {
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}
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profiles {
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microbiome_screening {
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process {
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// Assuming NCBI NT-sized DB
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withName: malt {
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maxRetries = 1
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memory = 1900.GB
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cpus = 112
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time = 1440.h
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queue = 'supercruncher'
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}
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}
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}
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// IMPORTANT this profile is not reproducible due to hardcoded paths. For initial/automated screening ONLY.
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hops {
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params {
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@ -20,6 +20,10 @@ Specific configurations for shh has been made for eager.
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### Contextual profiles
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#### Microbiome Sciences
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* `microbiome_screening` runs MALT straight to supercruncher (with no retries!) and full resources requested due to microbiome screening databases often easily reach this size
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#### Human Pop-Gen
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* `human`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 16500, -n 0.01`)
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