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documentation on how to fix bianca cluster configuration problem

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arontommi 2019-11-06 13:10:09 +01:00
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docs/uppmax.md
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@ -26,6 +26,12 @@ If running on Bianca, you will have no internet connection and these configs wil
Please use the nf-core helper tool on a different system to download the required pipeline files, and transfer them to bianca. Please use the nf-core helper tool on a different system to download the required pipeline files, and transfer them to bianca.
This helper tool bundles the config files in this repo together with the pipeline files, so the profile will still be available. This helper tool bundles the config files in this repo together with the pipeline files, so the profile will still be available.
Please note that Bianca only allocates 7 GB memory per core so max memory needs to be configured:
```bash
--max_memory "112GB"
```
## Getting more memory ## Getting more memory
If your nf-core pipeline run is running out of memory, you can run on a fat node with more memory using the following nextflow flags: If your nf-core pipeline run is running out of memory, you can run on a fat node with more memory using the following nextflow flags: