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fix sentieon errors

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This commit is contained in:
Ramprasad Neethiraj 2022-04-29 00:20:57 +02:00
parent 9da85209f2
commit 40c965c76b
1 changed files with 1 additions and 4 deletions
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5
conf/pipeline/raredisease/hasta.config
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@ -8,10 +8,7 @@ process {
memory = { check_max( 80.GB * task.attempt, 'memory' ) } memory = { check_max( 80.GB * task.attempt, 'memory' ) }
} }
withLabel:'sentieon' { withLabel:'sentieon' {
beforeScript = { [ beforeScript = { "export PATH=\$PATH:\$SENTIEON_INSTALL_DIR/sentieon-genomics-202010.02/bin" }
"export SENTIEON_LICENSE=\$(echo -e \$SENTIEON_LICENSE_BASE64 | base64 -d)",
"export PATH=\$PATH:\$SENTIEON_INSTALL_DIR/sentieon-genomics-202010.02/bin"
].join(";") }
} }
withName: BCFTOOLS_VIEW { withName: BCFTOOLS_VIEW {
if (params.genome == 'GRCh37') { if (params.genome == 'GRCh37') {