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fix sentieon errors
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1 changed files with 1 additions and 4 deletions
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@ -8,10 +8,7 @@ process {
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memory = { check_max( 80.GB * task.attempt, 'memory' ) }
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memory = { check_max( 80.GB * task.attempt, 'memory' ) }
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}
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}
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withLabel:'sentieon' {
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withLabel:'sentieon' {
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beforeScript = { [
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beforeScript = { "export PATH=\$PATH:\$SENTIEON_INSTALL_DIR/sentieon-genomics-202010.02/bin" }
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"export SENTIEON_LICENSE=\$(echo -e \$SENTIEON_LICENSE_BASE64 | base64 -d)",
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"export PATH=\$PATH:\$SENTIEON_INSTALL_DIR/sentieon-genomics-202010.02/bin"
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].join(";") }
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}
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}
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withName: BCFTOOLS_VIEW {
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withName: BCFTOOLS_VIEW {
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if (params.genome == 'GRCh37') {
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if (params.genome == 'GRCh37') {
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