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Create mpcdf.config

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James A. Fellows Yates 2020-09-03 20:11:56 +02:00 committed by GitHub
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conf/mpcdf.config Normal file
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params {
config_profile_description = 'MPCDF HPC profiles provided by nf-core/configs.'
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://www.mpcdf.mpg.de/services/computing'
}
profiles {
cobra {
// Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
// To create common cache dir (only until /u/ periodically cleared!)
process {
beforeScript = 'module load anaconda/3/2020.02'
executor = 'slurm'
}
executor {
queueSize =8
}
params {
config_profile_description = 'MPCDF cobra profile provided by nf-core/configs.'
max_memory = 750.GB
max_cpus = 80
max_time = 24.h
}
}
}