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Update eva.config

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James A. Fellows Yates 2022-03-14 14:56:01 +01:00 committed by GitHub
parent a2e2e94333
commit 4670f8bf0c
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conf/pipeline/eager/eva.config
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@ -74,6 +74,22 @@ process {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G" }
errorStrategy = { task.exitStatus in [1,143,137,104,134,139,140] ? 'retry' : 'finish' } errorStrategy = { task.exitStatus in [1,143,137,104,134,139,140] ? 'retry' : 'finish' }
} }
withName: bwa {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory} h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" }
}
withName: bwamem {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory} h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" }
}
withName: circularmapper {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory} h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" }
}
withName: bowtie2 {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${task.memory} h=!(bionode01|bionode02|bionode03|bionode04|bionode05|bionode06)" }
}
withName: samtools_flagstat { withName: samtools_flagstat {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G" }