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fix error introduced earlier

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This commit is contained in:
Piotr Faba 2020-07-02 21:57:44 +02:00
parent cb26bef3f3
commit 4828e78708
1 changed files with 8 additions and 13 deletions
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21
conf/bi.config
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@ -4,17 +4,12 @@ params{
config_profile_url = 'https://www.boehringer-ingelheim.com/'
}
params.globalConfig = set_global_config()
def set_global_config() {
def config = System.getenv('NXF_GLOBAL_CONFIG')
if(config == null)
{
def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
System.err.println(errorMessage)
}else{
includeConfig config
}
return config
def configVar = System.getenv('NXF_GLOBAL_CONFIG')
if(configVar == null)
{
def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
System.err.println(errorMessage)
}else{
params.globalConfig = configVar
includeConfig configVar
}