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added warnings to run on SCRATCH

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Tobias Schraink 2019-04-17 17:15:16 -04:00
parent 51c2a54399
commit 4a915e330a
2 changed files with 3 additions and 1 deletions
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3
conf/bigpurple.config
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@ -1,7 +1,8 @@
params { params {
config_profile_description = """ config_profile_description = """
NYU School of Medicine BigPurple cluster profile provided by nf-core/configs. NYU School of Medicine BigPurple cluster profile provided by nf-core/configs.
module load both singularity/3.1 and squashfs-tools/4.3 before running the pipeline with this profile! module load both singularity/3.1 and squashfs-tools/4.3 before running the pipeline with this profile!!
Run from your scratch or lab directory - Nextflow makes a lot of files!!
Also consider running the pipeline on a compute node the first time, as it will be pulling the docker image, which will be converted into a singularity image, which is heavy on the login node. Subsequent runs can be done on the login node, as the docker image will only be pulled and converted once. By default the images will be stored in ./work/singularity Also consider running the pipeline on a compute node the first time, as it will be pulling the docker image, which will be converted into a singularity image, which is heavy on the login node. Subsequent runs can be done on the login node, as the docker image will only be pulled and converted once. By default the images will be stored in ./work/singularity
""".stripIndents() """.stripIndents()
config_profile_contact = 'Tobias Schraink (@tobsecret)' config_profile_contact = 'Tobias Schraink (@tobsecret)'

1
conf/prince.config
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@ -1,6 +1,7 @@
params { params {
config_profile_description = """ config_profile_description = """
NYU prince cluster profile provided by nf-core/configs. NYU prince cluster profile provided by nf-core/configs.
Run from your scratch directory, the output files may be large!
Please consider running the pipeline on a compute node the first time, as it will be pulling the docker image, which will be converted into a singularity image, which is heavy on the login node. Subsequent runs can be done on the login node, as the docker image will only be pulled and converted once. By default the images will be stored in ./work/singularity Please consider running the pipeline on a compute node the first time, as it will be pulling the docker image, which will be converted into a singularity image, which is heavy on the login node. Subsequent runs can be done on the login node, as the docker image will only be pulled and converted once. By default the images will be stored in ./work/singularity
""".stripIndent() """.stripIndent()
config_profile_contact = 'Tobias Schraink (@tobsecret)' config_profile_contact = 'Tobias Schraink (@tobsecret)'