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add export to NXF_SINGULARITY_CACHEDIR
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# nf-core/configs: PROFILE Configuration
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# nf-core/configs: ku_sund_dangpu configuration
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All nf-core pipelines have been successfully configured for use on the DANGPU at the
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Novo Nordisk Foundation Center for Stem Cell Medicine (reNEW) and the Novo Nordisk Foundation Center for Protein Research (CPR) at the University of Copenhagen.
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@ -13,11 +13,12 @@ Before running the pipeline you will need to load Nextflow and Singularity using
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## Load Nextflow and Singularity environment modules
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module purge
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module load openjdk/11.0.0 nextflow/22.04.3 singularity/3.8.0
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# alternative module load jdk/1.8.0_291 nextflow/21.04.1.5556 singularity/3.8.0
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# alternative
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# module load jdk/1.8.0_291 nextflow/21.04.1.5556 singularity/3.8.0
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export NXF_OPTS='-Xms1g -Xmx4g'
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export NXF_HOME=/projects/dan1/people/${USER}/cache/nxf-home
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export NXF_TEMP=/scratch/tmp
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NXF_SINGULARITY_CACHEDIR=/projects/dan1/people/${USER}/cache/singularity-images
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export NXF_SINGULARITY_CACHEDIR=/projects/dan1/people/${USER}/cache/singularity-images
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```
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create nextflow directories if they dont exist:
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