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The following nf-core pipelines have been successfully configured for use on the the [University of Sheffield ShARC cluster](https://docs.hpc.shef.ac.uk/en/latest/index.html): The following nf-core pipelines have been successfully configured for use on the the [University of Sheffield ShARC cluster](https://docs.hpc.shef.ac.uk/en/latest/index.html):
- [atacseq](https://nf-co.re/atacseq) - [nf-co.re/atacseq](https://nf-co.re/atacseq)
- [chipseq](https://nf-co.re/chipseq) - [nf-co.re/chipseq](https://nf-co.re/chipseq)
- [rnaseq](https://nf-co.re/rnaseq) - [nf-co.re/rnaseq](https://nf-co.re/rnaseq)
- [sarek](https://nf-co.re/sarek) - [nf-co.re/sarek](https://nf-co.re/sarek)
When using [`sbc_sharc.config`](../conf/sbc_sharc.config) with the pipelines listed above, the appropriate configuration file from the list below will be loaded automatically: When using [`sbc_sharc.config`](../conf/sbc_sharc.config) with the pipelines listed above, the appropriate configuration file from the list below will be loaded automatically:
- atacseq: [sbc_sharc atacseq config](../conf/pipeline/atacseq/sbc_sharc.config) - [atacseq sbc_sharc.config](../conf/pipeline/atacseq/sbc_sharc.config)
- chipseq: [sbc_sharc chipseq config](../conf/pipeline/chipseq/sbc_sharc.config) - [chipseq sbc_sharc.config](../conf/pipeline/chipseq/sbc_sharc.config)
- rnaseq: [sbc_sharc rnaseq config](../conf/pipeline/rnaseq/sbc_sharc.config) - [rnaseq sbc_sharc.config](../conf/pipeline/rnaseq/sbc_sharc.config)
- sarek: [sbc_sharc sarek config](../conf/pipeline/sarek/sbc_sharc.config) - [sarek sbc_sharc.config](../conf/pipeline/sarek/sbc_sharc.config)
The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file might work with other nf-core pipelines as it stands but we cannot guarantee they will run without issue. We will be continuing to create, test and optimise configurations for new pipelines in the future. The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file might work with other nf-core pipelines as it stands but we cannot guarantee they will run without issue. We will be continuing to create, test and optimise configurations for new pipelines in the future.