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Merge pull request #22 from ewels/master

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Hotfix for breaking pipelines that don't already support params.custom_config_base
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Harshil Patel 2019-03-06 16:09:02 +00:00 committed by GitHub
commit 6370484894
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1 changed files with 17 additions and 17 deletions
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34
nfcore_custom.config
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@ -8,24 +8,24 @@
* name here. * name here.
*/ */
default_uri = "https://raw.githubusercontent.com/nf-core/configs/master/conf" params.custom_config_version = 'master'
config_base = "${params.custom_config_base ?: default_uri}" params.custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
profiles { profiles {
binac { includeConfig "${config_base}/binac.config" } binac { includeConfig "${params.custom_config_base}/binac.config" }
ccga { includeConfig "${config_base}/ccga.config" } ccga { includeConfig "${params.custom_config_base}/ccga.config" }
cfc { includeConfig "${config_base}/cfc.config" } cfc { includeConfig "${params.custom_config_base}/cfc.config" }
crick { includeConfig "${config_base}/crick.config" } crick { includeConfig "${params.custom_config_base}/crick.config" }
gis { includeConfig "${config_base}/gis.config" } gis { includeConfig "${params.custom_config_base}/gis.config" }
hebbe { includeConfig "${config_base}/hebbe.config" } hebbe { includeConfig "${params.custom_config_base}/hebbe.config" }
mendel { includeConfig "${config_base}/mendel.config" } mendel { includeConfig "${params.custom_config_base}/mendel.config" }
munin { includeConfig "${config_base}/munin.config" } munin { includeConfig "${params.custom_config_base}/munin.config" }
phoenix { includeConfig "${config_base}/phoenix.config" } phoenix { includeConfig "${params.custom_config_base}/phoenix.config" }
shh { includeConfig "${config_base}/shh.config" } shh { includeConfig "${params.custom_config_base}/shh.config" }
uct_hex { includeConfig "${config_base}/uct_hex.config" } uct_hex { includeConfig "${params.custom_config_base}/uct_hex.config" }
uppmax_devel { includeConfig "${config_base}/uppmax.config" uppmax_devel { includeConfig "${params.custom_config_base}/uppmax.config"
includeConfig "${config_base}/uppmax-devel.config" includeConfig "${params.custom_config_base}/uppmax-devel.config"
} }
uppmax { includeConfig "${config_base}/uppmax.config" } uppmax { includeConfig "${params.custom_config_base}/uppmax.config" }
uzh { includeConfig "${config_base}/uzh.config" } uzh { includeConfig "${params.custom_config_base}/uzh.config" }
} }