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Clarified where to store singularity images

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Gwenna Breton 2022-08-08 16:04:21 +02:00 committed by GitHub
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@ -24,9 +24,9 @@ source activate nf-core
### Storage of Singularity images ### Storage of Singularity images
When downloading a nf-core pipeline for the first time (or a specific version of a pipeline), you can choose to store the Singularity image for future use. A central location for these images is: `/apps/bio/dependencies/nf-core/singularities`. When downloading a nf-core pipeline for the first time (or a specific version of a pipeline), you can choose to store the Singularity image for future use. We chose to have a central location for these images on medair: `/apps/bio/dependencies/nf-core/singularities`.
If you run or add the following to your `.bashrc`, Nexflow will know where to store the images: For Nexflow to know where to store new images, run or add the following to your `.bashrc`:
```bash ```bash
export NXF_SINGULARITY_CACHEDIR="/apps/bio/dependencies/nf-core/singularities" export NXF_SINGULARITY_CACHEDIR="/apps/bio/dependencies/nf-core/singularities"