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Added info about Sentieon singularities

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Gwenna Breton 2022-07-07 14:24:15 +02:00 committed by GitHub
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@ -64,3 +64,7 @@ For example, the following job would run with the `wgs` profile:
```bash ```bash
run nextflow nf-core/raredisease -profile medair,wgs run nextflow nf-core/raredisease -profile medair,wgs
``` ```
### Sentieon
In some pipelines (sarek, raredisease) it is possible to use Sentieon for alignment and variant calling. If ones uses the label `sentieon` for running a process, the config file contains the path to the Sentieon singularity image on Medair.