millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-12-25 19:48:16 +00:00
Code Issues Releases Packages Activity

Update docs/template.md

Browse source 
Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
This commit is contained in:
Phil Ewels 2019-01-07 12:11:02 +01:00 committed by GitHub
parent 94e546fd4b
commit 6d14461adc
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 2 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

3
docs/template.md
View file

@ -17,7 +17,8 @@ module load Singularity/2.6.0
## Below are non-mandatory information on iGenomes specific configuration
A local copy of the iGenomes resource has been made available on PROFILE CLUSTER so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline. You can do this by simply using the `--genome <GENOME_ID>` parameter. Some of the more exotic genomes may not have been downloaded onto PROFILE CLUSTER so have a look in the `igenomes_base` path specified in [`profile.config`](../conf/profile.config).
A local copy of the iGenomes resource has been made available on PROFILE CLUSTER so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline.
You can do this by simply using the `--genome <GENOME_ID>` parameter.
>NB: You will need an account to use the HPC cluster on PROFILE CLUSTER in order to run the pipeline. If in doubt contact IT.