1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-12-22 18:38:17 +00:00

Add human salmon index and mouse star index

This commit is contained in:
Olga Botvinnik 2019-06-27 15:02:47 -07:00
parent d1983f8acd
commit 70b5205d15

View file

@ -68,11 +68,13 @@ params {
gtf = "${params.gencode_base}/human/v30/gencode.v30.annotation.ERCC92.gtf"
transcript_fasta = "${params.gencode_base}/human/v30/gencode.v30.transcripts.ERCC92.fa"
star = "${params.gencode_base}/human/v30/STARIndex/"
salmon_index = "${params.gencode_base}/human/v30/salmon_index/"
}
'GRCm38' {
fasta = "${params.gencode_base}/mouse/vM21/GRCm38.p6.genome.ERCC92.fa"
gtf = "${params.gencode_base}/mouse/vM21/gencode.vM21.annotation.ERCC92.gtf"
transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa"
start = "${params.gencode_base}/mouse/vM21/STARIndex/"
}
}