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Add human salmon index and mouse star index

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This commit is contained in:
Olga Botvinnik 2019-06-27 15:02:47 -07:00
parent d1983f8acd
commit 70b5205d15
1 changed files with 2 additions and 0 deletions
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conf/czbiohub_aws.config
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@ -68,11 +68,13 @@ params {
gtf = "${params.gencode_base}/human/v30/gencode.v30.annotation.ERCC92.gtf" gtf = "${params.gencode_base}/human/v30/gencode.v30.annotation.ERCC92.gtf"
transcript_fasta = "${params.gencode_base}/human/v30/gencode.v30.transcripts.ERCC92.fa" transcript_fasta = "${params.gencode_base}/human/v30/gencode.v30.transcripts.ERCC92.fa"
star = "${params.gencode_base}/human/v30/STARIndex/" star = "${params.gencode_base}/human/v30/STARIndex/"
salmon_index = "${params.gencode_base}/human/v30/salmon_index/"
} }
'GRCm38' { 'GRCm38' {
fasta = "${params.gencode_base}/mouse/vM21/GRCm38.p6.genome.ERCC92.fa" fasta = "${params.gencode_base}/mouse/vM21/GRCm38.p6.genome.ERCC92.fa"
gtf = "${params.gencode_base}/mouse/vM21/gencode.vM21.annotation.ERCC92.gtf" gtf = "${params.gencode_base}/mouse/vM21/gencode.vM21.annotation.ERCC92.gtf"
transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa" transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa"
start = "${params.gencode_base}/mouse/vM21/STARIndex/"
} }
} }