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Merge pull request #163 from piotr-faba-ardigen/add_bi_config

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resolve  #162 bug
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Alexander Peltzer 2020-06-19 08:57:44 +02:00 committed by GitHub
commit 7774a6a8f3
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1 changed files with 12 additions and 10 deletions
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22
conf/bi.config
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@ -3,16 +3,18 @@ params{
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'https://www.boehringer-ingelheim.com/'
}
params.globalConfig = determine_global_config()
includeConfig params.globalConfig
params.globalConfig = set_global_config()
def determine_global_config() {
if( System.getenv('NXF_GLOBAL_CONFIG') == null)
{
def errorMessage = "ERROR: Environment variable NXF_GLOBAL_CONFIG is missing. Set it to point to global.config file."
System.err.println(errorMessage)
throw new Exception(errorMessage)
}
return System.getenv('NXF_GLOBAL_CONFIG')
def set_global_config() {
def config = System.getenv('NXF_GLOBAL_CONFIG')
if(config == null)
{
def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
System.err.println(errorMessage)
}else{
includeConfig config
}
return config
}