millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-10 20:13:09 +00:00
Code Issues Releases Packages Activity

Merge pull request #163 from piotr-faba-ardigen/add_bi_config

Browse source 
resolve  #162 bug
This commit is contained in:
Alexander Peltzer 2020-06-19 08:57:44 +02:00 committed by GitHub
commit 7774a6a8f3
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 12 additions and 10 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

16
conf/bi.config
View file

@ -3,16 +3,18 @@ params{
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'https://www.boehringer-ingelheim.com/'
}
params.globalConfig = determine_global_config()
includeConfig params.globalConfig
params.globalConfig = set_global_config()
def determine_global_config() {
if( System.getenv('NXF_GLOBAL_CONFIG') == null)
def set_global_config() {
def config = System.getenv('NXF_GLOBAL_CONFIG')
if(config == null)
{
def errorMessage = "ERROR: Environment variable NXF_GLOBAL_CONFIG is missing. Set it to point to global.config file."
def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
System.err.println(errorMessage)
throw new Exception(errorMessage)
}else{
includeConfig config
}
return System.getenv('NXF_GLOBAL_CONFIG')
return config
}