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All nf-core pipelines have been successfully configured for use on the MUNIN cluster aka big iron. All nf-core pipelines have been successfully configured for use on the MUNIN cluster aka big iron.
To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download singularity image with all of the required software before execution of the pipeline. To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download a singularity image with all of the required software before execution of the pipeline.
Example: `nextflow run -profile munin` Example: `nextflow run -profile munin`
## Docker ## Docker
It is also possible to execute pipeline using Docker. It is also possible to execute the pipeline using Docker.
Example: `nextflow run -profile munin,docker` Example: `nextflow run -profile munin,docker`
## Below are non-mandatory information on iGenomes specific configuration ## Below are non-mandatory information on iGenomes specific configuration
A local copy of the iGenomes resource has been made available on MUNIN cluster so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline. A local copy of the iGenomes resource has been made available on the MUNIN cluster so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline.
You can do this by simply using the `--genome <GENOME_ID>` parameter. You can do this by simply using the `--genome <GENOME_ID>` parameter.
>NB: You will need an account to use the munin cluster in order to run the pipeline. If in doubt contact @szilva. >NB: You will need an account to use the MUNIN cluster in order to run the pipeline. If in doubt contact @szilva.