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Martin Proks 2019-01-11 15:28:10 +01:00
parent 89dbb6c061
commit 7acd9cf7df
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9
conf/munin.config
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@ -10,11 +10,18 @@ process {
executor = 'local'
}
sngularity {
singularity {
enabled = true
autoMounts = true
}
// To use docker instead of singularity, use nextflow run -profile munin,docker
docker {
enabled = false
mountFlags = 'z'
fixOwnership = true
}
params {
saveReference = true

8
docs/munin.md
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@ -4,6 +4,14 @@ All nf-core pipelines have been successfully configured for use on the MUNIN clu
To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download singularity image with all of the required software before execution of the pipeline.
Example: `nextflow run -profile munin`
## Docker
It is also possible to execute pipeline using Docker.
Example: `nextflow run -profile munin,docker`
## Below are non-mandatory information on iGenomes specific configuration
A local copy of the iGenomes resource has been made available on MUNIN cluster so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline.