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nf-configs/docs/munin.md
Martin Proks 7acd9cf7df
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nf-core/configs: MUNIN Configuration

All nf-core pipelines have been successfully configured for use on the MUNIN cluster aka big iron.

To use, run the pipeline with -profile munin. This will download and launch the munin.config which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download singularity image with all of the required software before execution of the pipeline.

Example: nextflow run -profile munin

Docker

It is also possible to execute pipeline using Docker.

Example: nextflow run -profile munin,docker

Below are non-mandatory information on iGenomes specific configuration

A local copy of the iGenomes resource has been made available on MUNIN cluster so you should be able to run the pipeline against any reference available in the igenomes.config specific to the nf-core pipeline. You can do this by simply using the --genome <GENOME_ID> parameter.

NB: You will need an account to use the munin cluster in order to run the pipeline. If in doubt contact @szilva.