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Merge pull request #288 from nf-core/TCLamnidis-patch-1

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added 1240k profile
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James A. Fellows Yates 2021-10-18 08:45:19 +02:00 committed by GitHub
commit 7f94989b39
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22
conf/pipeline/eager/eva.config
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@ -472,4 +472,26 @@ profiles {
bwaalnl = 16500 bwaalnl = 16500
} }
} }
1240k {
params {
// Specific nf-core/configs params
config_profile_contact = 'Thiseas C. Lamnidis (@TCLamnidis)'
config_profile_description = 'nf-core/eager 1240k data EVA profile provided by nf-core/configs'
}
executor {
queueSize = 6
}
process {
// Increasing walltime for bwa to avoid unnecessary retries
withName:bwa {
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 72.h : 48.h }
}
withName:markduplicates {
memory = { task.attempt == 3 ? 16.GB : task.attempt == 2 ? 8.GB : 4.GB }
}
}
}
} }