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Fixes formatting and ignore_params

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theoportlock 2021-09-17 11:48:22 +02:00
parent 9c97220919
commit 9116a09afe
1 changed files with 15 additions and 14 deletions
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29
conf/rosalind.config
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@ -1,28 +1,29 @@
params { params {
config_profile_description = 'Kings College London Rosalind HPC' config_profile_description = 'Kings College London Rosalind HPC'
config_profile_contact = 'Theo Portlock' config_profile_contact = 'Theo Portlock'
config_profile_url = 'https://rosalind.kcl.ac.uk/' config_profile_url = 'https://www.rosalind.kcl.ac.uk/'
} }
singularity { singularity {
enabled = true enabled = true
autoMounts = true autoMounts = true
docker.enabled = false docker.enabled = false
} }
params { params {
max_memory = 64.GB max_memory = 64.GB
max_cpus = 16 max_cpus = 16
max_time = 24.h max_time = 24.h
partition = 'shared' partition = 'shared'
schema_ignore_params = 'partition'
} }
process { process {
executor = 'slurm' executor = 'slurm'
maxRetries = 3 maxRetries = 3
clusterOptions = { "--partition=$params.partition" } clusterOptions = { "--partition=$params.partition" }
} }
executor { executor {
submitRateLimit = '1 sec' submitRateLimit = '1 sec'
} }