millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 16:29:55 +00:00
Code Issues Releases Packages Activity

Cleverer process time submission

Browse source
This commit is contained in:
jfy133 2020-07-08 09:36:56 +02:00
parent 563c27e1bb
commit 926c14f7ee
1 changed files with 10 additions and 10 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

16
conf/pipeline/eager/shh.config
View file

@ -10,7 +10,7 @@ params {
// Specific nf-core/eager process configuration // Specific nf-core/eager process configuration
process { process {
maxRetries = 5 maxRetries = 2
withName: malt { withName: malt {
maxRetries = 1 maxRetries = 1
@ -23,43 +23,43 @@ process {
withLabel:'sc_tiny'{ withLabel:'sc_tiny'{
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 1.GB * task.attempt, 'memory' ) } memory = { check_max( 1.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'sc_small'{ withLabel:'sc_small'{
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) } memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'sc_medium'{ withLabel:'sc_medium'{
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) } memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'mc_small'{ withLabel:'mc_small'{
cpus = { check_max( 2, 'cpus' ) } cpus = { check_max( 2, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) } memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'mc_medium' { withLabel:'mc_medium' {
cpus = { check_max( 4, 'cpus' ) } cpus = { check_max( 4, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) } memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'mc_large'{ withLabel:'mc_large'{
cpus = { check_max( 8, 'cpus' ) } cpus = { check_max( 8, 'cpus' ) }
memory = { check_max( 16.GB * task.attempt, 'memory' ) } memory = { check_max( 16.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'mc_huge'{ withLabel:'mc_huge'{
cpus = { check_max( 32, 'cpus' ) } cpus = { check_max( 32, 'cpus' ) }
memory = { check_max( 256.GB * task.attempt, 'memory' ) } memory = { check_max( 256.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1449.h : task.attempt == 2 ? 48.h : 1.h }
} }
} }