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Cleverer process time submission

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jfy133 2020-07-08 09:36:56 +02:00
parent 563c27e1bb
commit 926c14f7ee
1 changed files with 10 additions and 10 deletions
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20
conf/pipeline/eager/shh.config
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@ -10,11 +10,11 @@ params {
// Specific nf-core/eager process configuration // Specific nf-core/eager process configuration
process { process {
maxRetries = 5 maxRetries = 2
withName: malt { withName: malt {
maxRetries = 1 maxRetries = 1
memory = { task.attempt > 1 ? 1900.GB : 725.GB } memory = { task.attempt > 1 ? 1900.GB : 725.GB }
cpus = { task.attempt > 1 ? 112 : 64 } cpus = { task.attempt > 1 ? 112 : 64 }
time = 1440.h time = 1440.h
queue = { task.memory > 756.GB ? 'supercruncher' : 'long' } queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
@ -23,43 +23,43 @@ process {
withLabel:'sc_tiny'{ withLabel:'sc_tiny'{
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 1.GB * task.attempt, 'memory' ) } memory = { check_max( 1.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'sc_small'{ withLabel:'sc_small'{
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) } memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'sc_medium'{ withLabel:'sc_medium'{
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) } memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'mc_small'{ withLabel:'mc_small'{
cpus = { check_max( 2, 'cpus' ) } cpus = { check_max( 2, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) } memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'mc_medium' { withLabel:'mc_medium' {
cpus = { check_max( 4, 'cpus' ) } cpus = { check_max( 4, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) } memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'mc_large'{ withLabel:'mc_large'{
cpus = { check_max( 8, 'cpus' ) } cpus = { check_max( 8, 'cpus' ) }
memory = { check_max( 16.GB * task.attempt, 'memory' ) } memory = { check_max( 16.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
} }
withLabel:'mc_huge'{ withLabel:'mc_huge'{
cpus = { check_max( 32, 'cpus' ) } cpus = { check_max( 32, 'cpus' ) }
memory = { check_max( 256.GB * task.attempt, 'memory' ) } memory = { check_max( 256.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) } time = { task.attempt == 3 ? 1449.h : task.attempt == 2 ? 48.h : 1.h }
} }
} }
@ -99,7 +99,7 @@ profiles {
maltextract_matches = false maltextract_matches = false
maltextract_megansummary = false maltextract_megansummary = false
maltextract_percentidentity = 90.0 maltextract_percentidentity = 90.0
maltextract_topalignment = false maltextract_topalignment = false
maltextract_singlestranded = false maltextract_singlestranded = false
} }
} }