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Cleverer process time submission

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jfy133 2020-07-08 09:36:56 +02:00
parent 563c27e1bb
commit 926c14f7ee
1 changed files with 10 additions and 10 deletions
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16
conf/pipeline/eager/shh.config
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@ -10,7 +10,7 @@ params {
// Specific nf-core/eager process configuration
process {
maxRetries = 5
maxRetries = 2
withName: malt {
maxRetries = 1
@ -23,43 +23,43 @@ process {
withLabel:'sc_tiny'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 1.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
}
withLabel:'sc_small'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
}
withLabel:'sc_medium'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
}
withLabel:'mc_small'{
cpus = { check_max( 2, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
}
withLabel:'mc_medium' {
cpus = { check_max( 4, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
}
withLabel:'mc_large'{
cpus = { check_max( 8, 'cpus' ) }
memory = { check_max( 16.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) }
time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
}
withLabel:'mc_huge'{
cpus = { check_max( 32, 'cpus' ) }
memory = { check_max( 256.GB * task.attempt, 'memory' ) }
time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h, 'time' ) }
time = { task.attempt == 3 ? 1449.h : task.attempt == 2 ? 48.h : 1.h }
}
}