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Increased cpus and memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek

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lquayle88 2022-10-01 23:31:51 +01:00
parent 10c1490265
commit 9b451b53b7
1 changed files with 4 additions and 3 deletions
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7
conf/pipeline/sarek/sbc_sharc.config
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@ -26,13 +26,13 @@ process {
withLabel:process_low { withLabel:process_low {
cpus = { check_max( 2 * task.attempt, 'cpus' ) } cpus = { check_max( 2 * task.attempt, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) } memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) } time = { check_max( 6.h * task.attempt, 'time' ) }
} }
withLabel:process_medium { withLabel:process_medium {
cpus = { check_max( 6 * task.attempt, 'cpus' ) } cpus = { check_max( 6 * task.attempt, 'cpus' ) }
memory = { check_max( 12.GB * task.attempt, 'memory' ) } memory = { check_max( 12.GB * task.attempt, 'memory' ) }
time = { check_max( 6.h * task.attempt, 'time' ) } time = { check_max( 8.h * task.attempt, 'time' ) }
} }
withLabel:process_high { withLabel:process_high {
@ -75,7 +75,8 @@ process {
} }
withName:'GATK4_MARKDUPLICATES' { withName:'GATK4_MARKDUPLICATES' {
memory = { check_max( 20.GB * task.attempt, 'memory' ) } cpus = { check_max( 8 * task.attempt, 'cpus' ) }
memory = { check_max( 30.GB * task.attempt, 'memory' ) }
time = { check_max( 8.h * task.attempt, 'time' ) } time = { check_max( 8.h * task.attempt, 'time' ) }
} }