millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-10 20:13:09 +00:00
Code Issues Releases Packages Activity

Increased cpus and memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek

Browse source
This commit is contained in:
lquayle88 2022-10-01 23:31:51 +01:00
parent 10c1490265
commit 9b451b53b7
1 changed files with 4 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
conf/pipeline/sarek/sbc_sharc.config
View file

@ -26,13 +26,13 @@ process {
withLabel:process_low {
cpus = { check_max( 2 * task.attempt, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) }
time = { check_max( 6.h * task.attempt, 'time' ) }
}
withLabel:process_medium {
cpus = { check_max( 6 * task.attempt, 'cpus' ) }
memory = { check_max( 12.GB * task.attempt, 'memory' ) }
time = { check_max( 6.h * task.attempt, 'time' ) }
time = { check_max( 8.h * task.attempt, 'time' ) }
}
withLabel:process_high {
@ -75,7 +75,8 @@ process {
}
withName:'GATK4_MARKDUPLICATES' {
memory = { check_max( 20.GB * task.attempt, 'memory' ) }
cpus = { check_max( 8 * task.attempt, 'cpus' ) }
memory = { check_max( 30.GB * task.attempt, 'memory' ) }
time = { check_max( 8.h * task.attempt, 'time' ) }
}