millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Use flat nongzipped files

Browse source
This commit is contained in:
Olga Botvinnik 2019-05-31 13:17:48 -07:00
parent 1b2fcf5a98
commit 9c0315addb
1 changed files with 26 additions and 26 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

52
conf/czbiohub.config
View file

@ -47,59 +47,59 @@ params {
// GENCODE GTF and fasta files
genomes {
'GRCh38' {
fasta = "${params.gencode_base}/human/v29/GRCh38.p12.genome.fa.gz"
gtf = "${params.gencode_base}/human/v29/gencode.vM19.annotation.gtf.gz"
fasta = "${params.gencode_base}/human/v29/GRCh38.p12.genome.fa"
gtf = "${params.gencode_base}/human/v29/gencode.vM19.annotation.gtf"
}
'GRCm38' {
fasta = "${params.gencode_base}/mouse/vM19/GRCm38.p6.genome.fa.gz"
gtf = "${params.gencode_base}/mouse/vM19/gencode.vM19.annotation.gtf.gz"
fasta = "${params.gencode_base}/mouse/vM19/GRCm38.p6.genome.fa"
gtf = "${params.gencode_base}/mouse/vM19/gencode.vM19.annotation.gtf"
}
}
transgenes {
'ChR2' {
fasta = "${params.transgenes_base}/ChR2/ChR2.fa.gz"
gtf = "${params.transgenes_base}/ChR2/ChR2.gtf.gz"
fasta = "${params.transgenes_base}/ChR2/ChR2.fa"
gtf = "${params.transgenes_base}/ChR2/ChR2.gtf"
}
'Cre' {
fasta = "${params.transgenes_base}/Cre/Cre.fa.gz"
gtf = "${params.transgenes_base}/Cre/Cre.gtf.gz"
fasta = "${params.transgenes_base}/Cre/Cre.fa"
gtf = "${params.transgenes_base}/Cre/Cre.gtf"
}
'ERCC' {
fasta = "${params.transgenes_base}/ERCC92/ERCC92.fa.gz"
gtf = "${params.transgenes_base}/ERCC92/ERCC92.gtf.gz"
fasta = "${params.transgenes_base}/ERCC92/ERCC92.fa"
gtf = "${params.transgenes_base}/ERCC92/ERCC92.gtf"
}
'GCaMP6m' {
fasta = "${params.transgenes_base}/GCaMP6m/GCaMP6m.fa.gz"
gtf = "${params.transgenes_base}/GCaMP6m/GCaMP6m.gtf.gz"
fasta = "${params.transgenes_base}/GCaMP6m/GCaMP6m.fa"
gtf = "${params.transgenes_base}/GCaMP6m/GCaMP6m.gtf"
}
'GFP' {
fasta = "${params.transgenes_base}/Gfp/Gfp.fa.gz"
gtf = "${params.transgenes_base}/Gfp/Gfp.gtf.gz"
fasta = "${params.transgenes_base}/Gfp/Gfp.fa"
gtf = "${params.transgenes_base}/Gfp/Gfp.gtf"
}
'NpHR' {
fasta = "${params.transgenes_base}/NpHR/NpHR.fa.gz"
gtf = "${params.transgenes_base}/NpHR/NpHR.gtf.gz"
fasta = "${params.transgenes_base}/NpHR/NpHR.fa"
gtf = "${params.transgenes_base}/NpHR/NpHR.gtf"
}
'RCaMP' {
fasta = "${params.transgenes_base}/RCaMP/RCaMP.fa.gz"
gtf = "${params.transgenes_base}/RCaMP/RCaMP.gtf.gz"
fasta = "${params.transgenes_base}/RCaMP/RCaMP.fa"
gtf = "${params.transgenes_base}/RCaMP/RCaMP.gtf"
}
'RGECO' {
fasta = "${params.transgenes_base}/RGECO/RGECO.fa.gz"
gtf = "${params.transgenes_base}/RGECO/RGECO.gtf.gz"
fasta = "${params.transgenes_base}/RGECO/RGECO.fa"
gtf = "${params.transgenes_base}/RGECO/RGECO.gtf"
}
'Tdtom' {
fasta = "${params.transgenes_base}/Tdtom/Tdtom.fa.gz"
gtf = "${params.transgenes_base}/Tdtom/Tdtom.gtf.gz"
fasta = "${params.transgenes_base}/Tdtom/Tdtom.fa"
gtf = "${params.transgenes_base}/Tdtom/Tdtom.gtf"
}
'Car-T' {
fasta = "${params.transgenes_base}/car-t/car-t.fa.gz"
gtf = "${params.transgenes_base}/car-t/car-t.gtf.gz"
fasta = "${params.transgenes_base}/car-t/car-t.fa"
gtf = "${params.transgenes_base}/car-t/car-t.gtf"
}
'zsGreen' {
fasta = "${params.transgenes_base}/zsGreen/zsGreen.fa.gz"
gtf = "${params.transgenes_base}/zsGreen/zsGreen.gtf.gz"
fasta = "${params.transgenes_base}/zsGreen/zsGreen.fa"
gtf = "${params.transgenes_base}/zsGreen/zsGreen.gtf"
}
}
}