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Fixed code blocks for markdown linting

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ameynert 2021-03-24 13:55:31 +00:00 committed by GitHub
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docs/eddie.md
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@ -27,6 +27,7 @@ module avail igmm/apps/nextflow
``` ```
To load the most recent version: To load the most recent version:
```bash ```bash
module load igmm/apps/nextflow module load igmm/apps/nextflow
``` ```
@ -64,7 +65,7 @@ qlogin -l h_vmem=8G
If your eddie terminal disconnects your Nextflow job will stop. You can run Nextflow as a bash script on the command line using `nohup` to prevent this. If your eddie terminal disconnects your Nextflow job will stop. You can run Nextflow as a bash script on the command line using `nohup` to prevent this.
``` ```bash
nohup ./nextflow_run.sh & nohup ./nextflow_run.sh &
``` ```
@ -73,16 +74,19 @@ nohup ./nextflow_run.sh &
Wild west nodes on eddie can be accessed via ssh (node2c15, node2c16, node3g22). To run Nextflow on one of these nodes, do it within a [screen session](https://linuxize.com/post/how-to-use-linux-screen/). Wild west nodes on eddie can be accessed via ssh (node2c15, node2c16, node3g22). To run Nextflow on one of these nodes, do it within a [screen session](https://linuxize.com/post/how-to-use-linux-screen/).
Start a new screen session. Start a new screen session.
```bash ```bash
screen -S <session_name> screen -S <session_name>
``` ```
List existing screen sessions List existing screen sessions
```bash ```bash
screen -ls screen -ls
``` ```
Reconnect to an existing screen session Reconnect to an existing screen session
```bash ```bash
screen -r <session_name> screen -r <session_name>
``` ```