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Fix new CI test
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1 changed files with 14 additions and 1 deletions
15
.github/workflows/main.yml
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15
.github/workflows/main.yml
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@ -1,7 +1,9 @@
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name: Configs tests
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on: [pull_request, push]
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jobs:
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test_all_profiles:
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runs-on: ubuntu-latest
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name: Check if all profiles are tested
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@ -9,7 +11,18 @@ jobs:
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- uses: actions/checkout@v1
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- name: Check whether profiles are all tested
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run: python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml
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- run: nextflow config -show-profiles .
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check_nextflow_config:
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runs-on: ubuntu-latest
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name: Check if nextflow config runs in repository root
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steps:
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- uses: actions/checkout@v1
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- name: Install Nextflow
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run: |
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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- run: nextflow config -show-profiles ${GITHUB_WORKSPACE}
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profile_test:
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runs-on: ubuntu-latest
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name: Run ${{ matrix.profile }} profile
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