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Remove env vars from CI test and try running -show-profiles
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1 changed files with 2 additions and 5 deletions
7
.github/workflows/main.yml
vendored
7
.github/workflows/main.yml
vendored
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@ -8,8 +8,8 @@ jobs:
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steps:
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- uses: actions/checkout@v1
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- name: Check whether profiles are all tested
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run: |
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python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml
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run: python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml
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- run: nextflow config -show-profiles .
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profile_test:
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runs-on: ubuntu-latest
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name: Run ${{ matrix.profile }} profile
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@ -24,7 +24,4 @@ jobs:
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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- name: Check ${{ matrix.profile }} profile
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env:
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SCRATCH: '~'
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NXF_GLOBAL_CONFIG: awsbatch.config
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run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf -profile ${{ matrix.profile }}
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