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added Crick config for eager in eager.config and crick.md

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Alexandre Gilardet 2022-03-16 16:11:21 +00:00
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2 changed files with 25 additions and 0 deletions

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docs/pipeline/eager/crick.md Executable file
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# nf-core/configs: Crick eager specific configuration
Extra specific configuration for eager pipeline
## Usage
To use, run the pipeline with `-profile crick`.
This will download and launch the eager specific [`crick.config`](../../../conf/pipeline/eager/crick.config) which is adapted to data generated at the Crick and
processed on the Crick's HPC.
Example: `nextflow run nf-core/eager -profile crick`
#### screening
- Low coverage data.
#### production
- High coverage data.
#### external
- External higher coverage data.

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@ -12,4 +12,5 @@ profiles {
eva { includeConfig "${params.custom_config_base}/conf/pipeline/eager/eva.config" } eva { includeConfig "${params.custom_config_base}/conf/pipeline/eager/eva.config" }
maestro { includeConfig "${params.custom_config_base}/conf/pipeline/eager/maestro.config" } maestro { includeConfig "${params.custom_config_base}/conf/pipeline/eager/maestro.config" }
mpcdf { includeConfig "${params.custom_config_base}/conf/pipeline/eager/mpcdf.config" } mpcdf { includeConfig "${params.custom_config_base}/conf/pipeline/eager/mpcdf.config" }
crick { includeConfig "${params.custom_config_base}/conf/pipeline/eager/crick.config" }
} }