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added Crick config for eager in eager.config and crick.md
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docs/pipeline/eager/crick.md
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docs/pipeline/eager/crick.md
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# nf-core/configs: Crick eager specific configuration
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Extra specific configuration for eager pipeline
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## Usage
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To use, run the pipeline with `-profile crick`.
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This will download and launch the eager specific [`crick.config`](../../../conf/pipeline/eager/crick.config) which is adapted to data generated at the Crick and
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processed on the Crick's HPC.
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Example: `nextflow run nf-core/eager -profile crick`
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#### screening
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- Low coverage data.
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#### production
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- High coverage data.
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#### external
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- External higher coverage data.
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@ -12,4 +12,5 @@ profiles {
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eva { includeConfig "${params.custom_config_base}/conf/pipeline/eager/eva.config" }
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eva { includeConfig "${params.custom_config_base}/conf/pipeline/eager/eva.config" }
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maestro { includeConfig "${params.custom_config_base}/conf/pipeline/eager/maestro.config" }
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maestro { includeConfig "${params.custom_config_base}/conf/pipeline/eager/maestro.config" }
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mpcdf { includeConfig "${params.custom_config_base}/conf/pipeline/eager/mpcdf.config" }
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mpcdf { includeConfig "${params.custom_config_base}/conf/pipeline/eager/mpcdf.config" }
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crick { includeConfig "${params.custom_config_base}/conf/pipeline/eager/crick.config" }
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}
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}
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