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Update crukmi.config

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Simon Pearce 2022-09-01 11:23:07 +01:00 committed by GitHub
parent 800931bff2
commit a8faeda141
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15
conf/pipeline/sarek/crukmi.config
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@ -16,18 +16,3 @@ process {
} }
} }
def check_resource(obj) {
try {
if (obj.getClass() == nextflow.util.MemoryUnit && obj.compareTo(params.max_memory as nextflow.util.MemoryUnit) == 1)
return params.max_memory as nextflow.util.MemoryUnit
else if (obj.getClass() == nextflow.util.Duration && obj.compareTo(params.max_time as nextflow.util.Duration) == 1)
return params.max_time as nextflow.util.Duration
else if (obj.getClass() == java.lang.Integer)
return Math.min(obj, params.max_cpus as int)
else
return obj
} catch (all) {
println " ### ERROR ### Max params max_memory:'${params.max_memory}', max_time:'${params.max_time}' or max_cpus:'${params.max_cpus}' is not valid! Using default value: $obj"
}
}