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Update uppmax.config

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Maxime Garcia 2020-02-27 16:52:51 +01:00 committed by GitHub
parent 752a83b4c7
commit ab8998e12b
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1 changed files with 5 additions and 3 deletions
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6
conf/pipeline/sarek/uppmax.config
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@ -3,10 +3,12 @@
params { params {
config_profile_contact = 'Maxime Garcia (@MaxUlysse)' config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs' config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs'
}
params {
// Just useful until iGenomes is updated on UPPMAX // Just useful until iGenomes is updated on UPPMAX
igenomeIgnore = true igenomeIgnore = true
genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle' genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'
} }
if (hostname ==~ "i.*") {
params.singleCPUmem = 15.GB
}