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Merge pull request #264 from bwlang/varskip_designs

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adds varskip primer designs
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Alexander Peltzer 2022-10-19 10:55:54 +02:00 committed by GitHub
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14
conf/pipeline/viralrecon/genomes.config
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@ -68,6 +68,20 @@ params {
scheme = 'nCoV-2019'
}
}
'NEB' {
'vss1' {
fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta'
gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'
primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/NEB/nCoV-2019/vss1/neb_vss1.primer.bed'
scheme = 'nCoV-2019'
}
'vsl1' {
fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta'
gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'
primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/NEB/nCoV-2019/vsl1/neb_vsl1.primer.bed'
scheme = 'nCoV-2019'
}
}
}
}