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Remove env vars from CI test and try running -show-profiles

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This commit is contained in:
Phil Ewels 2020-06-26 14:24:51 +02:00
parent 28027a8489
commit b587a2d031
1 changed files with 2 additions and 5 deletions
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7
.github/workflows/main.yml vendored
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@ -8,8 +8,8 @@ jobs:
steps: steps:
- uses: actions/checkout@v1 - uses: actions/checkout@v1
- name: Check whether profiles are all tested - name: Check whether profiles are all tested
run: | run: python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml
python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml - run: nextflow config -show-profiles .
profile_test: profile_test:
runs-on: ubuntu-latest runs-on: ubuntu-latest
name: Run ${{ matrix.profile }} profile name: Run ${{ matrix.profile }} profile
@ -24,7 +24,4 @@ jobs:
wget -qO- get.nextflow.io | bash wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
- name: Check ${{ matrix.profile }} profile - name: Check ${{ matrix.profile }} profile
env:
SCRATCH: '~'
NXF_GLOBAL_CONFIG: awsbatch.config
run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf -profile ${{ matrix.profile }} run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf -profile ${{ matrix.profile }}